STRINGSTRING
Bra000108 protein (Brassica rapa) - STRING interaction network
"Bra000108" - AT2G38950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000108AT2G38950 (E=2e-239) | transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (738 aa)    
Predicted Functional Partners:
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.878
Bra018910
AT1G51450 (E=4e-139) | SPla/RYanodine receptor (SPRY) domain-containing protein (421 aa)
     
  0.813
Bra040838
AT4G27910 (E=2e-220) ATX4, SDG16 | SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding (932 aa)
     
  0.807
Bra021721
AT2G31650 (E=0.0) ATX1, SDG27 | ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (962 aa)
     
  0.807
Bra003467
AT3G61740 (E=0.0) SDG14, ATX3 | SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding (1035 aa)
     
  0.807
Bra032634
AT1G01370 (E=9e-048) HTR12, CENH3 | HTR12; DNA binding (241 aa)
       
  0.786
Bra030763
AT1G09210 (E=2e-193) | calreticulin 2 (CRT2) (660 aa)
       
  0.782
Bra028589
AT5G44050 (E=1e-085) | MATE efflux family protein (415 aa)
       
  0.782
Bra006058
AT5G44050 (E=9e-215) | MATE efflux family protein (526 aa)
       
  0.782
Bra037813
AT4G40030 (E=2e-017) | histone H3.2 (60 aa)
       
  0.776
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]