STRINGSTRING
Bra000112 protein (Brassica rapa) - STRING interaction network
"Bra000112" - AT2G39020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000112AT2G39020 (E=2e-109) | GCN5-related N-acetyltransferase (GNAT) family protein (234 aa)    
Predicted Functional Partners:
Bra035184
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (897 aa)
       
      0.886
Bra008474
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1274 aa)
       
      0.886
Bra003565
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1618 aa)
       
      0.886
Bra000659
AT4G08900 (E=4e-178) | arginase (341 aa)
   
 
  0.742
Bra033377
AT1G03150 (E=1e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (283 aa)
   
  0.677
Bra030521
AT1G03150 (E=2e-063) | GCN5-related N-acetyltransferase (GNAT) family protein (117 aa)
   
  0.677
Bra032548
AT1G03650 (E=2e-077) | GCN5-related N-acetyltransferase (GNAT) family protein (158 aa)
     
  0.676
Bra023435
AT5G13780 (E=3e-089) | GCN5-related N-acetyltransferase, putative (194 aa)
     
  0.676
Bra023321
AT5G11340 (E=1e-077) | GCN5-related N-acetyltransferase (GNAT) family protein (159 aa)
     
  0.676
Bra008969
AT5G11340 (E=8e-084) | GCN5-related N-acetyltransferase (GNAT) family protein (164 aa)
     
  0.676
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]