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Bra000115 protein (Brassica rapa) - STRING interaction network
"Bra000115" - AT2G39050 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000115AT2G39050 (E=6e-107) | hydroxyproline-rich glycoprotein family protein (326 aa)    
Predicted Functional Partners:
Bra004623
AT2G41475 (E=7e-082) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; CONTAINS InterPro DOMAIN/s- Lipase/lipooxygenase, PLAT/LH2 (InterPro-IPR008976), Embryo-specific 3 (InterPro-IPR010417); BEST Arabidopsis thaliana protein match is- embryo-specific protein-related (TAIR-AT5G62200.1); Has 60 Blast hits to 60 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (177 aa)
       
 
  0.687
Bra035902
AT5G62200 (E=2e-075) | embryo-specific protein-related (188 aa)
       
 
  0.672
Bra016931
AT2G41475 (E=1e-077) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; CONTAINS InterPro DOMAIN/s- Lipase/lipooxygenase, PLAT/LH2 (InterPro-IPR008976), Embryo-specific 3 (InterPro-IPR010417); BEST Arabidopsis thaliana protein match is- embryo-specific protein-related (TAIR-AT5G62200.1); Has 60 Blast hits to 60 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (183 aa)
       
 
  0.542
Bra018947
AT2G25980 (E=9e-046) | jacalin lectin family protein (166 aa)
           
  0.540
Bra018946
AT1G58160 (E=1e-044) | jacalin lectin family protein (149 aa)
           
  0.540
Bra013624
AT4G22540 (E=0.0) ORP2A | ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A); oxysterol binding / phosphoinositide binding (727 aa)
           
  0.505
Bra034388
AT2G28100 (E=3e-221) ATFUC1 | ATFUC1 (alpha-L-fucosidase 1); alpha-L-fucosidase (496 aa)
     
   
  0.477
Bra028649
AT5G08680 (E=6e-268) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (564 aa)
           
  0.474
Bra028648
AT5G08680 (E=7e-263) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (555 aa)
           
  0.474
Bra014322
AT1G52310 (E=1e-266) | protein kinase family protein / C-type lectin domain-containing protein (551 aa)
       
 
  0.460
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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