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Bra000116 protein (Brassica rapa) - STRING interaction network
"Bra000116" - AT2G39060 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000116AT2G39060 (E=1e-108) | nodulin MtN3 family protein (270 aa)    
Predicted Functional Partners:
Bra000287
AT4G12530 (E=3e-036) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (116 aa)
     
   
  0.481
Bra003784
AT1G74820 (E=8e-085) | cupin family protein (219 aa)
           
  0.449
Bra004657
AT2G41870 (E=9e-084) | remorin family protein (270 aa)
           
  0.418
Bra028644
AT5G09225 (E=1e-020) | unknown protein (71 aa)
           
  0.406
Bra039019
AT2G19770 (E=1e-063) PRF5 | PRF5 (PROFILIN5); actin binding / actin monomer binding ; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (134 aa)
           
  0.404
Bra039018
AT2G19760 (E=1e-066) PFN1, PRF1 | PRF1 (PROFILIN 1); actin binding ; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (131 aa)
           
  0.404
Bra036707
AT2G19760 (E=1e-066) PFN1, PRF1 | PRF1 (PROFILIN 1); actin binding ; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (131 aa)
           
  0.404
Bra036705
AT2G19770 (E=1e-063) PRF5 | PRF5 (PROFILIN5); actin binding / actin monomer binding ; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (134 aa)
           
  0.404
Bra031101
AT2G19770 (E=1e-061) PRF5 | PRF5 (PROFILIN5); actin binding / actin monomer binding ; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (134 aa)
           
  0.404
Bra031097
AT2G19760 (E=2e-066) PFN1, PRF1 | PRF1 (PROFILIN 1); actin binding ; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (131 aa)
           
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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