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Bra000126 protein (Brassica rapa) - STRING interaction network
"Bra000126" - AT2G39260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000126AT2G39260 (E=0.0) | RNA binding / binding / protein binding (1175 aa)    
Predicted Functional Partners:
Bra022091
AT5G47010 (E=0.0) UPF1, LBA1, ATUPF1 | LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase (1205 aa)
     
  0.997
Bra028017
AT1G33980 (E=2e-188) ATUPF3, UPF3 | Smg-4/UPF3 family protein (521 aa)
     
  0.996
Bra036737
AT1G33980 (E=4e-155) ATUPF3, UPF3 | Smg-4/UPF3 family protein (727 aa)
     
  0.995
Bra034457
AT1G33980 (E=5e-179) ATUPF3, UPF3 | Smg-4/UPF3 family protein (476 aa)
     
  0.995
Bra017513
AT5G47020 (E=0.0) | glycine-rich protein (1566 aa)
     
  0.988
Bra021790
AT2G32415 (E=0.0) | 3’-5’ exonuclease/ nucleic acid binding (863 aa)
     
 
  0.935
Bra005594
AT2G32415 (E=1e-190) | 3’-5’ exonuclease/ nucleic acid binding (892 aa)
     
 
  0.935
Bra039486
AT5G35910 (E=2e-294) | 3’-5’ exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein (867 aa)
     
 
  0.931
Bra021339
AT1G54440 (E=3e-198) | 3’-5’ exonuclease/ nucleic acid binding (590 aa)
     
 
  0.931
Bra005593
AT2G32415 (E=3e-048) | 3’-5’ exonuclease/ nucleic acid binding (115 aa)
     
 
  0.931
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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