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Bra000127 protein (Brassica rapa) - STRING interaction network
"Bra000127" - AT2G39290 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000127AT2G39290 (E=1e-110) PGPS1, PGP1, PGS1 | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (301 aa)    
Predicted Functional Partners:
Bra027046
AT1G62430 (E=9e-228) ATCDS1 | ATCDS1; phosphatidate cytidylyltransferase (421 aa)
   
 
  0.952
Bra013612
AT4G22340 (E=1e-171) | phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative (393 aa)
   
 
  0.952
Bra026404
AT4G26770 (E=1e-156) | phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groups (421 aa)
   
 
  0.929
Bra029521
AT4G04870 (E=2e-107) CLS | CLS (CARDIOLIPIN SYNTHASE); cardiolipin synthase/ phosphatidyltransferase (330 aa)
   
   
0.922
Bra028046
AT1G34260 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1442 aa)
       
  0.914
Bra021545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1774 aa)
       
  0.914
Bra016167
AT1G71010 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1541 aa)
       
  0.914
Bra011429
AT4G33240 (E=0.0) | 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding (1719 aa)
       
  0.914
Bra007954
AT1G71010 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1539 aa)
       
  0.914
Bra001545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1767 aa)
       
  0.914
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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