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Bra000129 protein (Brassica rapa) - STRING interaction network
"Bra000129" - AT2G39310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000129AT2G39310 (E=7e-202) JAL22 | JAL22 (JACALIN-RELATED LECTIN 22) (454 aa)    
Predicted Functional Partners:
Bra009746
AT5G24290 (E=1e-064) | integral membrane family protein (519 aa)
     
   
  0.472
Bra039927
AT2G22770 (E=7e-126) NAI1 | NAI1; DNA binding / transcription factor (316 aa)
           
  0.451
Bra030207
AT2G22770 (E=2e-114) NAI1 | NAI1; DNA binding / transcription factor (326 aa)
           
  0.451
Bra027198
AT3G15950 (E=7e-264) NAI2 | NAI2 (751 aa)
     
   
  0.421
Bra021148
AT3G15950 (E=4e-239) NAI2 | NAI2 (756 aa)
     
   
  0.421
Bra034060
AT3G09260 (E=1e-292) PYK10, PSR3.1, BGLU23 | PYK10; beta-glucosidase/ copper ion binding / fucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (524 aa)
     
   
  0.416
Bra001320
AT3G09260 (E=5e-296) PYK10, PSR3.1, BGLU23 | PYK10; beta-glucosidase/ copper ion binding / fucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (524 aa)
     
   
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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