STRINGSTRING
Bra000133 protein (Brassica rapa) - STRING interaction network
"Bra000133" - AT2G39430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000133AT2G39430 (E=1e-109) | disease resistance-responsive protein-related / dirigent protein-related (296 aa)    
Predicted Functional Partners:
Bra031162
AT2G21110 (E=8e-080) | disease resistance-responsive family protein (194 aa)
           
  0.541
Bra027410
AT3G13650 (E=7e-081) | disease resistance response (188 aa)
           
  0.541
Bra011895
AT4G38700 (E=6e-068) | disease resistance-responsive family protein (177 aa)
           
  0.505
Bra033152
AT4G11210 (E=3e-068) | disease resistance-responsive family protein / dirigent family protein (187 aa)
     
   
  0.495
Bra019277
AT4G23690 (E=3e-093) | disease resistance-responsive family protein / dirigent family protein (187 aa)
           
  0.479
Bra014354
AT1G55210 (E=8e-092) | disease resistance response (188 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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