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Bra000134 protein (Brassica rapa) - STRING interaction network
"Bra000134" - AT2G39435 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000134AT2G39435 (E=2e-119) | unknown protein (457 aa)    
Predicted Functional Partners:
Bra030155
AT1G29660 (E=2e-185) | GDSL-motif lipase/hydrolase family protein (364 aa)
           
  0.607
Bra010821
AT1G29660 (E=2e-181) | GDSL-motif lipase/hydrolase family protein (364 aa)
           
  0.607
Bra010665
AT4G39730 (E=1e-091) | lipid-associated family protein (178 aa)
           
  0.526
Bra030156
AT1G29670 (E=3e-175) | GDSL-motif lipase/hydrolase family protein (360 aa)
           
  0.472
Bra025064
AT5G45670 (E=6e-193) | GDSL-motif lipase/hydrolase family protein (356 aa)
           
  0.472
Bra010820
AT1G29670 (E=2e-184) | GDSL-motif lipase/hydrolase family protein (361 aa)
           
  0.472
Bra025426
AT1G17040 (E=6e-141) SHA, ATSHA, STATLA | SHA (SH2 DOMAIN PROTEIN A); protein binding / signal transducer/ transcription factor (405 aa)
           
  0.457
Bra038541
AT2G22170 (E=5e-092) | lipid-associated family protein (181 aa)
           
  0.441
Bra030259
AT2G22170 (E=2e-093) | lipid-associated family protein (182 aa)
           
  0.441
Bra038439
AT1G31812 (E=9e-039) ACBP6, ACBP | ACBP6 (acyl-CoA-binding protein 6); acyl-CoA binding / phosphatidylcholine binding (92 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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