STRINGSTRING
Bra000148 protein (Brassica rapa) - STRING interaction network
"Bra000148" - AT4G03160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000148AT4G03160 (E=5e-031) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- stem, root, carpel; EXPRESSED DURING- 4 anthesis; BEST Arabidopsis thaliana protein match is- DNA binding (TAIR-AT4G03170.1); Has 29 Blast hits to 29 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (220 aa)    
Predicted Functional Partners:
Bra023990
AT4G31650 (E=2e-059) | transcriptional factor B3 family protein (357 aa)
           
  0.456
Bra011288
AT4G31630 (E=4e-165) | transcriptional factor B3 family protein (532 aa)
           
  0.456
Bra026034
AT1G16640 (E=2e-024) | transcriptional factor B3 family protein (80 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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