STRINGSTRING
Bra000158 protein (Brassica rapa) - STRING interaction network
"Bra000158" - AT2G40000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000158AT2G40000 (E=2e-191) HSPRO2, ATHSPRO2 | HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) (424 aa)    
Predicted Functional Partners:
Bra006925
AT3G52450 (E=5e-211) PUB22 | PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase (435 aa)
     
      0.624
Bra031654
AT1G09020 (E=8e-252) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (488 aa)
       
      0.618
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
       
      0.618
Bra018586
AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (439 aa)
       
      0.618
Bra008267
AT1G76600 (E=2e-075) | unknown protein (212 aa)
     
   
  0.509
Bra003714
AT1G76600 (E=3e-072) | unknown protein (210 aa)
     
   
  0.509
Bra012479
AT1G25400 (E=8e-086) | unknown protein (288 aa)
     
   
  0.486
Bra032591
AT1G02660 (E=2e-252) | lipase class 3 family protein (717 aa)
     
   
  0.449
Bra004841
AT2G44500 (E=6e-155) | unknown protein (529 aa)
     
   
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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