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Bra000159 protein (Brassica rapa) - STRING interaction network
"Bra000159" - AT2G40010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
Bra000159AT2G40010 (E=8e-149) | 60S acidic ribosomal protein P0 (RPP0A) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (319 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra036519
AT5G24510 (E=5e-030) | 60s acidic ribosomal protein P1, putative (111 aa)
   
  0.999
Bra032620
AT4G00810 (E=1e-032) | 60S acidic ribosomal protein P1 (RPP1B) (113 aa)
   
  0.999
Bra033049
AT5G40040 (E=3e-021) | 60S acidic ribosomal protein P2 (RPP2E) (114 aa)
   
  0.999
Bra040197
AT3G04380 (E=2e-191) SUVR4, SDG31 | SUVR4; histone-lysine N-methyltransferase (942 aa)
   
  0.999
Bra001104
AT3G04380 (E=5e-194) SUVR4, SDG31 | SUVR4; histone-lysine N-methyltransferase (756 aa)
   
  0.999
Bra000929
AT4G00810 (E=1e-040) | 60S acidic ribosomal protein P1 (RPP1B) (113 aa)
   
  0.999
Bra033285
AT5G47700 (E=9e-031) | 60S acidic ribosomal protein P1 (RPP1C) (154 aa)
   
  0.999
Bra030495
AT5G47700 (E=6e-029) | 60S acidic ribosomal protein P1 (RPP1C) (121 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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