STRINGSTRING
Bra000163 protein (Brassica rapa) - STRING interaction network
"Bra000163" - AT2G40060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000163AT2G40060 (E=1e-108) | protein binding / structural molecule (264 aa)    
Predicted Functional Partners:
Bra014076
AT1G47380 (E=3e-232) | protein phosphatase 2C-related / PP2C-related (428 aa)
       
 
  0.948
Bra016679
AT1G14830 (E=0.0) ADL1C, ADL5, DRP1C | ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C); GTP binding / GTPase (614 aa)
       
 
  0.885
Bra032214
AT1G47380 (E=3e-235) | protein phosphatase 2C-related / PP2C-related (424 aa)
       
 
  0.821
Bra015619
AT1G47380 (E=6e-213) | protein phosphatase 2C-related / PP2C-related (428 aa)
       
 
  0.821
Bra034864
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1488 aa)
       
 
  0.796
Bra034166
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1448 aa)
       
 
  0.796
Bra029698
AT3G08530 (E=0.0) | clathrin heavy chain, putative (1479 aa)
       
 
  0.796
Bra001391
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1452 aa)
       
 
  0.796
Bra001286
AT3G08530 (E=0.0) | clathrin heavy chain, putative (1484 aa)
       
 
  0.796
Bra022067
AT3G01780 (E=0.0) TPLATE | TPLATE; binding (1191 aa)
       
 
  0.721
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]