STRINGSTRING
Bra000190 protein (Brassica rapa) - STRING interaction network
"Bra000190" - AT2G40480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000190AT2G40480 (E=4e-168) | unknown protein (474 aa)    
Predicted Functional Partners:
Bra010951
AT1G27430 (E=3e-158) | GYF domain-containing protein (1059 aa)
           
  0.648
Bra010950
AT1G24300 (E=1e-167) | LOCATED IN- chloroplast; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- GYF (InterPro-IPR003169); BEST Arabidopsis thaliana protein match is- GYF domain-containing protein (TAIR-AT1G27430.1); Has 21766 Blast hits to 10819 proteins in 514 species- Archae - 0; Bacteria - 738; Metazoa - 8216; Fungi - 1952; Plants - 1070; Viruses - 89; Other Eukaryotes - 9701 (source- NCBI BLink). (1266 aa)
           
  0.648
Bra012304
AT1G22040 (E=7e-128) | kelch repeat-containing F-box family protein (467 aa)
           
  0.607
Bra015128
AT3G25470 (E=9e-144) | bacterial hemolysin-related (307 aa)
           
  0.543
Bra013219
AT3G25470 (E=2e-142) | bacterial hemolysin-related (305 aa)
           
  0.543
Bra024843
AT2G01910 (E=6e-279) ATMAP65-6, MAP65-6 | ATMAP65-6; microtubule binding (608 aa)
           
  0.526
Bra023152
AT1G30960 (E=6e-171) | GTP-binding protein (ERG) (433 aa)
           
  0.477
Bra014897
AT1G30960 (E=4e-140) | GTP-binding protein (ERG) (413 aa)
           
  0.477
Bra026811
AT1G14690 (E=4e-273) MAP65-7 | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) (595 aa)
           
  0.440
Bra008719
AT5G15130 (E=6e-198) WRKY72, ATWRKY72 | WRKY72; transcription factor (551 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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