STRINGSTRING
Bra000198 protein (Brassica rapa) - STRING interaction network
"Bra000198" - AT2G40650 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra000198AT2G40650 (E=5e-106) | pre-mRNA splicing factor PRP38 family protein (352 aa)    
Predicted Functional Partners:
Bra014095
AT5G17900 (E=4e-084) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- extracellular region; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G08580.1); Has 36643 Blast hits to 21191 proteins in 1090 species- Archae - 183; Bacteria - 2726; Metazoa - 17629; Fungi - 3036; Plants - 994; Viruses - 215; Other Eukaryotes - 11860 (source- NCBI BLink). (309 aa)
     
 
  0.954
Bra012173
AT4G08580 (E=9e-077) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G17900.1); Has 39042 Blast hits to 22601 proteins in 1140 species- Archae - 179; Bacteria - 2955; Metazoa - 18595; Fungi - 3264; Plants - 1100; Viruses - 245; Other Eukaryotes - 12704 (sou [...] (432 aa)
     
 
  0.954
Bra006427
AT5G17900 (E=9e-119) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- extracellular region; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G08580.1); Has 36643 Blast hits to 21191 proteins in 1090 species- Archae - 183; Bacteria - 2726; Metazoa - 17629; Fungi - 3036; Plants - 994; Viruses - 215; Other Eukaryotes - 11860 (source- NCBI BLink). (429 aa)
     
 
  0.954
Bra002114
AT4G08580 (E=8e-168) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G17900.1); Has 39042 Blast hits to 22601 proteins in 1140 species- Archae - 179; Bacteria - 2955; Metazoa - 18595; Fungi - 3264; Plants - 1100; Viruses - 245; Other Eukaryotes - 12704 (sou [...] (429 aa)
     
 
  0.954
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
 
  0.932
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
 
    0.926
Bra039942
AT2G23070 (E=8e-197) | casein kinase II alpha chain, putative (420 aa)
     
      0.909
Bra036806
AT3G50000 (E=1e-063) CKA2, ATCKA2 | CKA2 (CASEIN KINASE II, ALPHA CHAIN 2); kinase (337 aa)
     
      0.909
Bra036044
AT3G50000 (E=3e-183) CKA2, ATCKA2 | CKA2 (CASEIN KINASE II, ALPHA CHAIN 2); kinase (389 aa)
     
      0.909
Bra032182
AT2G23070 (E=1e-185) | casein kinase II alpha chain, putative (401 aa)
     
      0.909
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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