STRINGSTRING
Bra000201 protein (Brassica rapa) - STRING interaction network
"Bra000201" - AT2G40730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000201AT2G40730 (E=0.0) | HEAT repeat-containing protein (797 aa)    
Predicted Functional Partners:
Bra016049
AT1G72560 (E=0.0) PSD | PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding (989 aa)
       
 
  0.705
Bra008039
AT1G72560 (E=1e-015) PSD | PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding (56 aa)
       
 
  0.705
Bra005835
AT5G05010 (E=2e-222) | clathrin adaptor complexes medium subunit-related (896 aa)
     
      0.638
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
 
  0.638
Bra028774
AT5G05010 (E=5e-235) | clathrin adaptor complexes medium subunit-related (524 aa)
     
      0.636
Bra009404
AT5G05010 (E=3e-220) | clathrin adaptor complexes medium subunit-related (609 aa)
     
      0.636
Bra039048
AT3G28710 (E=7e-207) | H+-transporting two-sector ATPase, putative (351 aa)
     
      0.600
Bra033054
AT3G28715 (E=8e-206) | H+-transporting two-sector ATPase, putative (351 aa)
     
      0.600
Bra025348
AT3G28710 (E=5e-206) | H+-transporting two-sector ATPase, putative (351 aa)
     
      0.600
Bra040674
AT2G19480 (E=3e-128) NFA02, NFA2, NAP1;2 | NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding (376 aa)
       
      0.545
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]