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Bra000224 protein (Brassica rapa) - STRING interaction network
"Bra000224" - AT2G41310 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra000224AT2G41310 (E=2e-087) ATRR3, ARR8 | ATRR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator (216 aa)    
Predicted Functional Partners:
Bra040986
AT5G39500 (E=0.0) | pattern formation protein, putative (1433 aa)
       
      0.903
Bra028434
AT5G39500 (E=0.0) | pattern formation protein, putative (1675 aa)
       
      0.903
Bra019694
AT1G13980 (E=0.0) GN, VAN7, EMB30 | GN (GNOM); GTP-GDP antiporter/ protein homodimerization (1448 aa)
       
      0.903
Bra002249
AT5G19610 (E=0.0) | sec7 domain-containing protein (1373 aa)
       
      0.903
Bra036215
AT3G29350 (E=1e-075) AHP2 | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (156 aa)
       
 
  0.632
Bra033398
AT1G03430 (E=2e-080) AHP5 | AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase (156 aa)
       
 
  0.632
Bra028236
AT5G39340 (E=2e-069) AHP3, ATHP2 | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase (178 aa)
       
 
  0.632
Bra027169
AT3G16360 (E=6e-063) AHP4 | AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups (124 aa)
       
 
  0.632
Bra025394
AT3G29350 (E=3e-077) AHP2 | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (156 aa)
       
 
  0.632
Bra023876
AT3G21510 (E=2e-074) AHP1 | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1); histidine phosphotransfer kinase (154 aa)
       
 
  0.632
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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