STRINGSTRING
Bra000226 protein (Brassica rapa) - STRING interaction network
"Bra000226" - AT2G41350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000226AT2G41350 (E=5e-144) | unknown protein (298 aa)    
Predicted Functional Partners:
Bra037482
AT5G48520 (E=9e-286) | unknown protein (650 aa)
     
  0.978
Bra018870
AT1G50710 (E=3e-204) | unknown protein (419 aa)
     
  0.914
Bra028853
AT5G03050 (E=1e-058) | unknown protein (135 aa)
       
      0.906
Bra018720
AT1G48280 (E=2e-210) | hydroxyproline-rich glycoprotein family protein (547 aa)
       
      0.906
Bra009553
AT5G03050 (E=2e-053) | unknown protein (131 aa)
       
      0.903
Bra030475
AT1G50710 (E=4e-142) | unknown protein (406 aa)
     
  0.895
Bra022916
AT2G32980 (E=3e-136) | unknown protein (293 aa)
           
  0.607
Bra034848
AT5G05970 (E=0.0) NEDD1 | NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1); nucleotide binding (1183 aa)
     
 
  0.570
Bra009155
AT5G05970 (E=1e-297) NEDD1 | NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1); nucleotide binding (729 aa)
     
 
  0.570
Bra007622
AT3G61650 (E=2e-273) TUBG1 | TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule ; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (473 aa)
         
  0.563
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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