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Bra000230 protein (Brassica rapa) - STRING interaction network
"Bra000230" - AT2G41530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000230AT2G41530 (E=1e-152) ATSFGH, SFGH | SFGH (S-FORMYLGLUTATHIONE HYDROLASE); S-formylglutathione hydrolase/ hydrolase, acting on ester bonds ; Serine hydrolase involved in the detoxification of formaldehyde (284 aa)    
Predicted Functional Partners:
Bra033706
AT5G43940 (E=4e-221) HOT5, ADH2, GSNOR | HOT5 (sensitive to hot temperatures 5); S-(hydroxymethyl)glutathione dehydrogenase/ S-nitrosoglutathione reductase (379 aa)
  0.966
Bra027516
AT5G43940 (E=9e-201) HOT5, ADH2, GSNOR | HOT5 (sensitive to hot temperatures 5); S-(hydroxymethyl)glutathione dehydrogenase/ S-nitrosoglutathione reductase (406 aa)
  0.966
Bra016378
AT4G22110 (E=4e-025) | alcohol dehydrogenase, putative (221 aa)
 
  0.963
Bra023290
AT1G32780 (E=4e-201) | alcohol dehydrogenase, putative (394 aa)
  0.960
Bra015693
AT1G77120 (E=1e-200) ADH1, ADH, ATADH, ATADH1 | ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (379 aa)
  0.959
Bra003690
AT1G77120 (E=3e-178) ADH1, ADH, ATADH, ATADH1 | ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (379 aa)
  0.959
Bra031208
AT1G64710 (E=1e-200) | alcohol dehydrogenase, putative (382 aa)
  0.958
Bra020469
AT5G24760 (E=8e-201) | alcohol dehydrogenase, putative (380 aa)
  0.958
Bra025081
AT5G42250 (E=1e-207) | alcohol dehydrogenase, putative (389 aa)
  0.956
Bra010185
AT1G32780 (E=4e-118) | alcohol dehydrogenase, putative (253 aa)
  0.956
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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