STRINGSTRING
Bra000240 protein (Brassica rapa) - STRING interaction network
"Bra000240" - AT2G41770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000240AT2G41770 (E=0.0) | unknown protein (766 aa)    
Predicted Functional Partners:
Bra021367
AT3G03180 (E=3e-052) | Got1-like family protein (148 aa)
           
  0.483
Bra017152
AT2G37880 (E=2e-097) | unknown protein (250 aa)
           
  0.481
Bra005159
AT2G37790 (E=2e-156) | aldo/keto reductase family protein (315 aa)
           
  0.455
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
           
  0.408
Bra000023
AT2G37840 (E=0.0) | protein kinase family protein (722 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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