STRINGSTRING
Bra000243 protein (Brassica rapa) - STRING interaction network
"Bra000243" - AT2G41900 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000243AT2G41900 (E=3e-023) | zinc finger (CCCH-type) family protein (128 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
       
    0.923
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
       
    0.923
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
       
    0.923
Bra015086
AT3G24800 (E=2e-094) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (378 aa)
       
    0.919
Bra013241
AT3G24800 (E=4e-105) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (390 aa)
       
    0.919
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
       
    0.664
Bra029252
AT5G62540 (E=2e-082) UBC3 | UBC3 (ubiquitin-conjugating enzyme 3); ubiquitin-protein ligase (150 aa)
       
  0.611
Bra026833
AT1G14400 (E=5e-088) UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase (152 aa)
       
  0.611
Bra024808
AT2G02760 (E=2e-079) ATUBC2, UBC2 | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (152 aa)
       
  0.611
Bra026222
AT1G14400 (E=9e-087) UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase (152 aa)
       
  0.611
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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