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Bra000260 protein (Brassica rapa) - STRING interaction network
"Bra000260" - AT2G42490 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000260AT2G42490 (E=0.0) | copper amine oxidase, putative (788 aa)    
Predicted Functional Partners:
Bra011132
AT4G29720 (E=9e-247) ATPAO5 | ATPAO5 (Polyamine oxidase 5); amine oxidase/ electron carrier/ oxidoreductase (541 aa)
         
  0.943
Bra024137
AT4G29720 (E=3e-222) ATPAO5 | ATPAO5 (Polyamine oxidase 5); amine oxidase/ electron carrier/ oxidoreductase (515 aa)
         
  0.940
Bra006210
AT5G13700 (E=9e-237) ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine oxidase (471 aa)
         
  0.933
Bra038432
AT1G31710 (E=4e-296) | copper amine oxidase, putative (556 aa)
   
   
0.915
Bra018469
AT4G12290 (E=0.0) | amine oxidase/ copper ion binding / quinone binding (743 aa)
   
   
 
0.910
Bra024619
AT1G23800 (E=3e-279) ALDH2B7, ALDH2B | ALDH2B7; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (536 aa)
     
 
  0.906
Bra018090
AT3G48000 (E=7e-281) ALDH2B4, ALDH2, ALDH2A | ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4); 3-chloroallyl aldehyde dehydrogenase/ ATP binding / aldehyde dehydrogenase (NAD) (539 aa)
     
 
  0.906
Bra016330
AT1G23800 (E=7e-279) ALDH2B7, ALDH2B | ALDH2B7; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (537 aa)
     
 
  0.906
Bra032205
AT1G44170 (E=3e-232) ALDH3H1, ALDH4 | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (482 aa)
     
 
  0.903
Bra030906
AT1G54100 (E=4e-265) ALDH7B4 | ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (504 aa)
     
 
  0.903
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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