STRINGSTRING
Bra000263 protein (Brassica rapa) - STRING interaction network
"Bra000263" - AT2G42530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000263AT2G42530 (E=7e-048) COR15B | COR15B (COLD REGULATED 15B) (142 aa)    
Predicted Functional Partners:
Bra029121
AT5G52300 (E=9e-090) RD29B, LTI65 | LTI65 (LOW-TEMPERATURE-INDUCED 65) (659 aa)
           
  0.483
Bra022770
AT4G25490 (E=3e-082) CBF1, DREB1B, ATCBF1 | CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor (214 aa)
           
  0.468
Bra019162
AT4G25470 (E=1e-082) CBF2, DREB1C, FTQ4, ATCBF2 | CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor (214 aa)
           
  0.468
Bra025819
AT1G20450 (E=1e-029) LTI29, LTI45, ERD10 | ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding (271 aa)
     
   
  0.464
Bra022584
AT5G52300 (E=6e-154) RD29B, LTI65 | LTI65 (LOW-TEMPERATURE-INDUCED 65) (572 aa)
           
  0.461
Bra036546
AT5G25610 (E=9e-168) RD22 | RD22; nutrient reservoir (387 aa)
           
  0.449
Bra020508
AT5G25610 (E=5e-169) RD22 | RD22; nutrient reservoir (387 aa)
           
  0.449
Bra009854
AT5G25610 (E=2e-174) RD22 | RD22; nutrient reservoir (387 aa)
           
  0.449
Bra008661
AT5G15970 (E=5e-014) KIN2, COR6.6 | KIN2 (65 aa)
           
  0.448
Bra028759
AT5G05410 (E=2e-050) DREB2A, DREB2 | DREB2A; DNA binding / transcription activator/ transcription factor (305 aa)
           
  0.446
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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