STRINGSTRING
Bra000272 protein (Brassica rapa) - STRING interaction network
"Bra000272" - AT2G42680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000272AT2G42680 (E=1e-070) MBF1A, ATMBF1A | MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator (142 aa)    
Predicted Functional Partners:
Bra036648
AT4G12400 (E=2e-216) | stress-inducible protein, putative (553 aa)
     
        0.744
Bra027022
AT1G62740 (E=4e-271) | stress-inducible protein, putative (567 aa)
     
        0.744
Bra026980
AT1G12270 (E=1e-137) | stress-inducible protein, putative (455 aa)
     
        0.744
Bra018477
AT4G12400 (E=9e-263) | stress-inducible protein, putative (553 aa)
     
        0.744
Bra012947
AT1G12270 (E=1e-012) | stress-inducible protein, putative (168 aa)
     
        0.744
Bra040123
AT3G04710 (E=3e-205) | ankyrin repeat family protein (594 aa)
     
        0.738
Bra030557
AT1G04190 (E=1e-167) | tetratricopeptide repeat (TPR)-containing protein (331 aa)
     
        0.738
Bra001120
AT3G04710 (E=2e-210) | ankyrin repeat family protein (456 aa)
     
        0.738
Bra036433
AT3G03773 (E=6e-078) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- CS domain (InterPro-IPR007052), HSP20-like chaperone (InterPro-IPR008978), CS (InterPro-IPR017447); BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT4G02450.2); Has 482 Blast hits to 482 proteins in 157 species- Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 87; Plants - 64; Viruses - 0; Other Eukaryotes - 90 (source- NCBI BLink). (150 aa)
     
        0.729
Bra033355
AT4G02450 (E=3e-038) | glycine-rich protein (230 aa)
     
        0.729
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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