STRINGSTRING
Bra000274 protein (Brassica rapa) - STRING interaction network
"Bra000274" - AT2G42780 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000274AT2G42780 (E=7e-103) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of transcription; LOCATED IN- integral to membrane, nucleus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- RNA polymerase II transcription factor SIII, subunit A (InterPro-IPR010684); Has 143 Blast hits to 142 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 19; Plants - 18; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (406 aa)    
Predicted Functional Partners:
Bra006730
AT5G59140 (E=1e-050) | SKP1 family protein (96 aa)
       
  0.976
Bra002588
AT5G59140 (E=5e-050) | SKP1 family protein (96 aa)
       
  0.976
Bra030092
AT1G28350 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase (740 aa)
       
      0.890
Bra010883
AT1G28350 (E=8e-231) | ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase (794 aa)
       
      0.890
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
         
  0.859
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
         
  0.859
Bra035940
AT5G61150 (E=4e-166) VIP4 | VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding (622 aa)
     
    0.812
Bra029332
AT5G61150 (E=6e-163) VIP4 | VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding (626 aa)
     
    0.812
Bra032544
AT1G03750 (E=0.0) CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding (1643 aa)
     
  0.811
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
       
  0.763
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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