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Bra000276 protein (Brassica rapa) - STRING interaction network
"Bra000276" - AT2G42870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000276AT2G42870 (E=2e-035) PAR1, HLH1 | PAR1 (PHY RAPIDLY REGULATED 1) (116 aa)    
Predicted Functional Partners:
Bra009544
AT5G03500 (E=2e-072) | transcription coactivator (168 aa)
       
      0.820
Bra000317
AT2G43650 (E=5e-192) EMB2777 | EMB2777 (EMBRYO DEFECTIVE 2777) (652 aa)
       
      0.820
Bra010558
AT4G36540 (E=3e-113) BEE2 | BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor (300 aa)
       
 
  0.627
Bra039618
AT2G18300 (E=3e-119) | basic helix-loop-helix (bHLH) family protein (337 aa)
       
      0.612
Bra028845
AT5G03500 (E=6e-063) | transcription coactivator (205 aa)
       
      0.612
Bra037742
AT2G43010 (E=2e-140) PIF4, SRL2 | PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor (406 aa)
       
 
  0.586
Bra037695
AT2G43650 (E=2e-023) EMB2777 | EMB2777 (EMBRYO DEFECTIVE 2777) (248 aa)
       
      0.572
Bra037693
AT2G43650 (E=5e-020) EMB2777 | EMB2777 (EMBRYO DEFECTIVE 2777) (149 aa)
       
      0.572
Bra037814
AT5G65380 (E=5e-235) | ripening-responsive protein, putative (483 aa)
           
  0.463
Bra024381
AT5G65380 (E=2e-245) | ripening-responsive protein, putative (484 aa)
           
  0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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