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Bra000279 protein (Brassica rapa) - STRING interaction network
"Bra000279" - AT2G42890 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000279AT2G42890 (E=1e-228) AML2 | AML2 (ARABIDOPSIS-MEI2-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding (787 aa)    
Predicted Functional Partners:
Bra029726
AT3G08850 (E=0.0) RAPTOR1B, ATRAPTOR1B, RAPTOR1 | RAPTOR1; nucleotide binding / protein binding (1346 aa)
     
 
  0.859
Bra001342
AT3G08850 (E=0.0) RAPTOR1B, ATRAPTOR1B, RAPTOR1 | RAPTOR1; nucleotide binding / protein binding (1358 aa)
     
 
  0.859
Bra038408
AT5G60110 (E=2e-103) APUM18 | APUM18 (Arabidopsis Pumilio 18); RNA binding / binding (318 aa)
     
   
  0.480
Bra035624
AT5G56510 (E=4e-125) APUM12 | APUM12 (ARABIDOPSIS PUMILIO 12); RNA binding / binding (560 aa)
     
   
  0.480
Bra033659
AT5G43110 (E=5e-089) APUM14 | APUM14 (Arabidopsis Pumilio 14); RNA binding / binding (472 aa)
     
   
  0.480
Bra032843
AT5G43110 (E=1e-083) APUM14 | APUM14 (Arabidopsis Pumilio 14); RNA binding / binding (516 aa)
     
   
  0.480
Bra031375
AT1G22240 (E=3e-149) APUM8 | APUM8 (Arabidopsis Pumilio 8); RNA binding / binding (456 aa)
     
   
  0.480
Bra030058
AT5G43110 (E=7e-084) APUM14 | APUM14 (Arabidopsis Pumilio 14); RNA binding / binding (514 aa)
     
   
  0.480
Bra028921
AT5G56510 (E=2e-222) APUM12 | APUM12 (ARABIDOPSIS PUMILIO 12); RNA binding / binding (575 aa)
     
   
  0.480
Bra028041
AT1G35750 (E=2e-169) APUM10 | APUM10 (Arabidopsis Pumilio 10); RNA binding / binding (529 aa)
     
   
  0.480
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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