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Bra000285 protein (Brassica rapa) - STRING interaction network
"Bra000285" - AT2G43030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000285AT2G43030 (E=4e-114) | ribosomal protein L3 family protein (266 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
 
  0.999
Bra016064
ATCG00790 (E=6e-054) RPL16 | chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit (326 aa)
 
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra017341
AT3G25920 (E=1e-114) RPL15 | RPL15; structural constituent of ribosome (280 aa)
 
  0.999
Bra025174
AT3G25920 (E=5e-106) RPL15 | RPL15; structural constituent of ribosome (270 aa)
 
  0.999
Bra035054
AT1G78630 (E=3e-131) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (240 aa)
 
  0.999
Bra008373
AT1G78630 (E=3e-122) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (242 aa)
 
  0.999
Bra040702
AT3G01790 (E=4e-082) | ribosomal protein L13 family protein (193 aa)
 
  0.999
Bra000989
AT3G01790 (E=2e-094) | ribosomal protein L13 family protein (197 aa)
 
  0.999
Bra000339
AT2G44060 (E=9e-153) | late embryogenesis abundant family protein / LEA family protein (777 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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