STRINGSTRING
Bra000300 protein (Brassica rapa) - STRING interaction network
"Bra000300" - AT2G43320 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000300AT2G43320 (E=1e-112) | unknown protein (377 aa)    
Predicted Functional Partners:
Bra034296
AT2G26200 (E=3e-126) | EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Methyltransferase type 12 (InterPro-IPR013217); BEST Arabidopsis thaliana protein match is- methyltransferase (TAIR-AT1G54650.1); Has 1504 Blast hits to 1429 proteins in 277 species- Archae - 33; Bacteria - 213; Metazoa - 664; Fungi - 202; Plants - 139; Viruses - 0; Other Eukaryotes - 253 (source- NCBI BLink). (530 aa)
     
   
  0.522
Bra036856
AT3G50850 (E=1e-044) | unknown protein (223 aa)
     
   
  0.497
Bra027533
AT5G44170 (E=9e-108) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- Expressed protein (TAIR-AT1G08125.1); Has 565 Blast hits to 565 proteins in 102 species- Archae - 0; Bacteria - 6; Metazoa - 261; Fungi - 146; Plants - 99; Viruses - 0; Other Eukaryotes - 53 (source- NCBI BLink). (229 aa)
     
   
  0.497
Bra003849
AT1G73320 (E=2e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; BEST Arabidopsis thaliana protein match is- Expressed protein (TAIR-AT1G08125.1); Has 1043 Blast hits to 1041 proteins in 162 species- Archae - 0; Bacteria - 35; Metazoa - 424; Fungi - 344; Plants - 150; Viruses - 0; Other Eukaryotes - 90 (source- NCBI BLink). (655 aa)
           
  0.479
Bra011653
AT4G35987 (E=7e-146) | unknown protein (305 aa)
           
  0.476
Bra025347
AT3G28700 (E=2e-229) | unknown protein (477 aa)
           
  0.473
Bra018653
AT1G08125 (E=4e-155) | Expressed protein (323 aa)
           
  0.473
Bra014384
AT3G62910 (E=9e-201) APG3 | APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific (418 aa)
           
  0.468
Bra007712
AT3G62910 (E=3e-195) APG3 | APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific (417 aa)
           
  0.468
Bra004482
AT2G47020 (E=7e-146) | peptide chain release factor, putative (374 aa)
           
  0.468
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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