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Bra000303 protein (Brassica rapa) - STRING interaction network
"Bra000303" - AT2G43360 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000303AT2G43360 (E=4e-186) BIO2, BIOB | BIO2 (BIOTIN AUXOTROPH 2); biotin synthase (380 aa)    
Predicted Functional Partners:
Bra002715
AT5G57590 (E=0.0) BIO1 | BIO1 (biotin auxotroph 1); adenosylmethionine-8-amino-7-oxononanoate transaminase (839 aa)
 
 
  0.994
Bra006813
AT5G57590 (E=0.0) BIO1 | BIO1 (biotin auxotroph 1); adenosylmethionine-8-amino-7-oxononanoate transaminase (834 aa)
 
 
  0.993
Bra039546
AT5G57590 (E=1e-248) BIO1 | BIO1 (biotin auxotroph 1); adenosylmethionine-8-amino-7-oxononanoate transaminase (593 aa)
 
 
  0.954
Bra033956
AT2G25710 (E=1e-157) HCS1 | HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (710 aa)
       
  0.947
Bra031335
AT3G22200 (E=2e-237) POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate-pyruvate transaminase (502 aa)
   
 
  0.871
Bra031334
AT3G22200 (E=1e-035) POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate-pyruvate transaminase (211 aa)
   
 
  0.871
Bra031332
AT3G22200 (E=2e-266) POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate-pyruvate transaminase (500 aa)
   
 
  0.871
Bra023845
AT3G22200 (E=1e-259) POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate-pyruvate transaminase (501 aa)
   
 
  0.871
Bra009438
AT5G04620 (E=5e-216) ATBIOF | ATBIOF (BIOTIN F); 8-amino-7-oxononanoate synthase/ transaminase (437 aa)
   
 
  0.811
Bra035887
AT1G37150 (E=4e-037) HCS2 | HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (193 aa)
       
  0.761
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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