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Bra000309 protein (Brassica rapa) - STRING interaction network
"Bra000309" - AT2G43520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000309AT2G43520 (E=4e-031) ATTI2 | ATTI2; serine-type endopeptidase inhibitor (92 aa)    
Predicted Functional Partners:
Bra006223
AT5G13920 (E=1e-070) | zinc knuckle (CCHC-type) family protein (362 aa)
           
  0.477
Bra036790
AT3G51570 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1222 aa)
           
  0.406
Bra036233
AT4G02940 (E=1e-220) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (608 aa)
           
  0.406
Bra023885
AT3G21380 (E=2e-168) | LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Mannose-binding lectin (InterPro-IPR001229); BEST Arabidopsis thaliana protein match is- MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR-AT1G52040.1); Has 1279 Blast hits to 507 proteins in 33 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1276; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (540 aa)
           
  0.406
Bra003090
AT5G53020 (E=2e-253) | unknown protein (709 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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