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Bra000317 protein (Brassica rapa) - STRING interaction network
"Bra000317" - AT2G43650 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000317AT2G43650 (E=5e-192) EMB2777 | EMB2777 (EMBRYO DEFECTIVE 2777) (652 aa)    
Predicted Functional Partners:
Bra037166
AT5G66540 (E=2e-178) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). ; Involved in nucleolar processing of pre-1 [...] (526 aa)
     
  0.998
Bra025791
AT5G66540 (E=3e-018) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). (129 aa)
     
  0.997
Bra012079
AT5G66530 (E=1e-056) | aldose 1-epimerase family protein (489 aa)
     
  0.997
Bra010934
AT1G27470 (E=0.0) | transducin-related / WD-40 repeat protein-related (792 aa)
     
  0.992
Bra000634
AT4G07410 (E=0.0) | transducin family protein / WD-40 repeat family protein (801 aa)
     
  0.992
Bra032831
AT1G27470 (E=0.0) | transducin-related / WD-40 repeat protein-related (800 aa)
     
  0.991
Bra036111
AT5G27120 (E=2e-232) | SAR DNA-binding protein, putative (536 aa)
     
  0.991
Bra020601
AT5G27120 (E=3e-109) | SAR DNA-binding protein, putative (488 aa)
     
  0.991
Bra009978
AT5G27120 (E=4e-233) | SAR DNA-binding protein, putative (537 aa)
     
  0.991
Bra038327
AT1G69070 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nop14-like protein (InterPro-IPR007276); Has 64668 Blast hits to 30830 proteins in 1152 species- Archae - 207; Bacteria - 18692; Metazoa - 20758; Fungi - 6782; Plants - 2177; Viruses - 523; Other Eukaryotes - 15529 (source- NCBI BLink). (904 aa)
     
 
  0.988
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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