STRINGSTRING
Bra000338 protein (Brassica rapa) - STRING interaction network
"Bra000338" - AT2G44040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000338AT2G44040 (E=2e-173) | dihydrodipicolinate reductase family protein (348 aa)    
Predicted Functional Partners:
Bra039337
AT2G45440 (E=1e-189) DHDPS2 | DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); catalytic/ dihydrodipicolinate synthase/ lyase (366 aa)
     
 
  0.948
Bra014465
AT3G60880 (E=1e-189) DHDPS, DHDPS1 | dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) (365 aa)
         
  0.945
Bra004912
AT2G45440 (E=4e-198) DHDPS2 | DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); catalytic/ dihydrodipicolinate synthase/ lyase (365 aa)
         
  0.943
Bra011461
AT4G33680 (E=2e-237) AGD2 | AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase (459 aa)
     
 
  0.936
Bra013138
AT2G13810 (E=2e-154) ALD1 | ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (404 aa)
         
  0.892
Bra038537
AT2G22250 (E=6e-231) ATAAT, AAT, MEE17 | aminotransferase class I and II family protein (476 aa)
         
  0.627
Bra035187
AT1G80360 (E=5e-187) | aminotransferase class I and II family protein (394 aa)
         
  0.627
Bra034580
AT4G33680 (E=1e-233) AGD2 | AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase (756 aa)
         
  0.627
Bra030251
AT2G22250 (E=8e-225) ATAAT, AAT, MEE17 | aminotransferase class I and II family protein (466 aa)
         
  0.627
Bra013137
AT2G13810 (E=5e-180) ALD1 | ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (367 aa)
         
  0.627
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]