STRINGSTRING
Bra000349 protein (Brassica rapa) - STRING interaction network
"Bra000349" - AT2G44310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000349AT2G44310 (E=1e-067) | calcium-binding EF hand family protein (142 aa)    
Predicted Functional Partners:
Bra036793
AT3G51510 (E=3e-065) | unknown protein (186 aa)
           
  0.505
Bra015547
AT1G07040 (E=7e-162) | unknown protein (361 aa)
           
  0.505
Bra002039
AT3G11420 (E=4e-238) | fringe-related protein (509 aa)
           
  0.505
Bra038129
AT1G53590 (E=0.0) NTMC2TYPE6.1, NTMC2T6.1 | NTMC2T6.1 (763 aa)
           
  0.503
Bra034167
AT3G11150 (E=6e-078) | unknown protein (349 aa)
           
  0.503
Bra028310
AT5G52450 (E=1e-205) | MATE efflux protein-related (479 aa)
           
  0.503
Bra028309
AT5G52450 (E=1e-211) | MATE efflux protein-related (484 aa)
           
  0.503
Bra009270
AT5G07330 (E=5e-061) | unknown protein (152 aa)
           
  0.503
Bra009207
AT5G06570 (E=5e-151) | hydrolase (332 aa)
           
  0.503
Bra005899
AT5G06570 (E=2e-149) | hydrolase (334 aa)
           
  0.503
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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