STRINGSTRING
Bra000367 protein (Brassica rapa) - STRING interaction network
"Bra000367" - AT2G45060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000367AT2G45060 (E=2e-112) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP022280 (InterPro-IPR016803); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G26410.1); Has 50 Blast hits to 50 proteins in 14 species- Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (275 aa)    
Predicted Functional Partners:
Bra028522
AT5G42030 (E=3e-107) ABIL4 | ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) (287 aa)
           
  0.474
Bra025451
AT5G42030 (E=2e-102) ABIL4 | ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) (276 aa)
           
  0.474
Bra006245
AT5G14240 (E=5e-100) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Thioredoxin fold (InterPro-IPR012335), Phosducin (InterPro-IPR001200), Thioredoxin-like fold (InterPro-IPR012336); Has 750 Blast hits to 750 proteins in 282 species- Archae - 0; Bacteria - 2; Metazoa - 486; Fungi - 126; Plants - 51; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink). (256 aa)
           
  0.473
Bra008770
AT5G14240 (E=3e-107) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Thioredoxin fold (InterPro-IPR012335), Phosducin (InterPro-IPR001200), Thioredoxin-like fold (InterPro-IPR012336); Has 750 Blast hits to 750 proteins in 282 species- Archae - 0; Bacteria - 2; Metazoa - 486; Fungi - 126; Plants - 51; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink). (256 aa)
           
  0.441
Bra025792
AT1G20100 (E=3e-064) | unknown protein (272 aa)
           
  0.414
Bra015431
AT1G05500 (E=1e-288) SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1 | NTMC2T2.1 (559 aa)
           
  0.412
Bra017996
AT3G49290 (E=4e-140) ABIL2 | ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) (317 aa)
           
  0.408
Bra037385
AT4G01080 (E=6e-196) | unknown protein (432 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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