STRINGSTRING
Bra000375 protein (Brassica rapa) - STRING interaction network
"Bra000375" - AT2G45160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000375AT2G45160 (E=8e-236) | scarecrow transcription factor family protein (607 aa)    
Predicted Functional Partners:
Bra014055
AT1G46480 (E=4e-104) WOX4 | WOX4 (WUSCHEL RELATED HOMEOBOX 4); transcription factor (257 aa)
       
      0.613
Bra032212
AT1G46480 (E=5e-096) WOX4 | WOX4 (WUSCHEL RELATED HOMEOBOX 4); transcription factor (251 aa)
       
      0.612
Bra028749
AT3G11260 (E=2e-053) WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor (174 aa)
       
      0.612
Bra009132
AT3G11260 (E=4e-058) WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor (192 aa)
       
      0.612
Bra039894
AT2G17950 (E=2e-113) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (302 aa)
       
      0.610
Bra037245
AT2G17950 (E=2e-100) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (311 aa)
       
      0.610
Bra024485
AT2G17950 (E=9e-112) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (294 aa)
       
      0.610
Bra034855
AT3G11260 (E=1e-022) WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor (143 aa)
       
      0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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