STRINGSTRING
Bra000376 protein (Brassica rapa) - STRING interaction network
"Bra000376" - AT2G45170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000376AT2G45170 (E=1e-062) ATATG8E, ATG8E | AtATG8e; microtubule binding (122 aa)    
Predicted Functional Partners:
Bra033370
AT1G03060 (E=0.0) | WD-40 repeat family protein / beige-related (3552 aa)
       
 
  0.987
Bra000869
AT4G02660 (E=0.0) | WD-40 repeat family protein / beige-related (3575 aa)
       
 
  0.987
Bra021999
AT5G45900 (E=0.0) APG7, ATAPG7, ATG7, ATATG7 | APG7 (AUTOPHAGY 7); APG8 activating enzyme (697 aa)
     
  0.978
Bra027529
AT1G51540 (E=1e-048) | INVOLVED IN- biological_process unknown; LOCATED IN- Golgi apparatus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch repeat type 2 (InterPro-IPR011498), Kelch related (InterPro-IPR013089), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- kelch repeat-containing protein (TAIR-AT3G27220.1); Has 1571 Blast hits to 1365 proteins in 151 species- Archae - 11; Bacteria [...] (323 aa)
     
  0.978
Bra028821
AT5G61500 (E=2e-017) ATATG3, ATG3 | ATG3 (253 aa)
     
  0.978
Bra028689
AT5G61500 (E=8e-159) ATATG3, ATG3 | ATG3 (306 aa)
     
  0.978
Bra012950
AT5G61500 (E=5e-142) ATATG3, ATG3 | ATG3 (309 aa)
     
  0.978
Bra014522
AT3G59950 (E=8e-184) | autophagy 4b (APG4b) (419 aa)
     
  0.975
Bra007495
AT3G59950 (E=1e-120) | autophagy 4b (APG4b) (426 aa)
     
  0.975
Bra004808
AT2G44140 (E=4e-186) | autophagy 4a (APG4a) (466 aa)
     
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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