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Bra000384 protein (Brassica rapa) - STRING interaction network
"Bra000384" - AT2G45300 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000384AT2G45300 (E=4e-255) | 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (514 aa)    
Predicted Functional Partners:
Bra030270
AT2G21940 (E=3e-140) | shikimate kinase, putative (302 aa)
 
 
  0.979
Bra014158
AT1G48850 (E=9e-215) EMB1144 | EMB1144 (embryo defective 1144); chorismate synthase (441 aa)
 
  0.979
Bra032268
AT1G48850 (E=5e-219) EMB1144 | EMB1144 (embryo defective 1144); chorismate synthase (438 aa)
 
  0.979
Bra020756
AT3G06350 (E=5e-264) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (602 aa)
 
 
  0.979
Bra040225
AT3G06350 (E=2e-260) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (595 aa)
 
 
  0.978
Bra001195
AT3G06350 (E=2e-268) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (597 aa)
 
 
  0.978
Bra025234
AT3G26900 (E=2e-101) | shikimate kinase family protein (289 aa)
     
  0.969
Bra011857
AT4G39540 (E=7e-130) | shikimate kinase family protein (296 aa)
 
 
  0.914
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
   
 
  0.828
Bra037185
AT5G66120 (E=2e-196) | 3-dehydroquinate synthase, putative (440 aa)
 
  0.819
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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