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Bra000387 protein (Brassica rapa) - STRING interaction network
"Bra000387" - AT4G17910 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000387AT4G17910 (E=3e-190) | transferase, transferring acyl groups (451 aa)    
Predicted Functional Partners:
Bra020174
AT5G22130 (E=1e-218) PNT1 | PNT1 (PEANUT 1); alpha-1,4-mannosyltransferase/ mannosyltransferase/ transferase, transferring glycosyl groups (437 aa)
     
 
  0.939
Bra003321
AT3G58130 (E=3e-125) | N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (256 aa)
     
 
  0.935
Bra030387
AT1G52380 (E=1e-141) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (428 aa)
       
      0.736
Bra018966
AT1G52380 (E=7e-110) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (397 aa)
       
      0.736
Bra007381
AT3G58130 (E=3e-081) | N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (211 aa)
     
 
  0.710
Bra037418
AT4G01510 (E=1e-081) ARV2 | ARV2 (243 aa)
       
 
  0.588
Bra033295
AT1G01020 (E=4e-093) ARV1 | ARV1 (239 aa)
       
 
  0.588
Bra031555
AT1G07140 (E=2e-078) SIRANBP | SIRANBP; Ran GTPase binding (228 aa)
       
      0.588
Bra030675
AT1G07140 (E=8e-082) SIRANBP | SIRANBP; Ran GTPase binding (224 aa)
       
      0.588
Bra022775
AT2G30060 (E=1e-079) | Ran-binding protein 1b (RanBP1b) (221 aa)
       
      0.588
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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