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Bra000395 protein (Brassica rapa) - STRING interaction network
"Bra000395" - AT2G45680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000395AT2G45680 (E=9e-099) | TCP family transcription factor, putative (311 aa)    
Predicted Functional Partners:
Bra012992
AT5G60960 (E=1e-232) | pentatricopeptide (PPR) repeat-containing protein (515 aa)
       
 
  0.684
Bra004407
AT1G69690 (E=2e-098) | TCP family transcription factor, putative (321 aa)
       
 
0.661
Bra015964
AT1G73805 (E=2e-155) | calmodulin binding (457 aa)
       
      0.615
Bra013289
AT4G18170 (E=1e-121) WRKY28, ATWRKY28 | WRKY28; transcription factor (308 aa)
       
      0.615
Bra012614
AT4G18170 (E=3e-138) WRKY28, ATWRKY28 | WRKY28; transcription factor (312 aa)
       
      0.615
Bra003828
AT1G73805 (E=5e-172) | calmodulin binding (425 aa)
       
      0.615
Bra011768
AT4G37460 (E=0.0) SRFR1 | SRFR1 (SUPPRESSOR OF RPS4-RLD 1); protein complex scaffold (1034 aa)
       
      0.572
Bra027238
AT3G15500 (E=1e-149) ATNAC3, ANAC055 | ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor (333 aa)
       
      0.509
Bra019052
AT4G27410 (E=8e-148) RD26, ANAC072 | RD26 (RESPONSIVE TO DESICCATION 26); transcription activator/ transcription factor (300 aa)
       
      0.509
Bra018998
AT1G52890 (E=3e-148) ANAC019 | ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor (383 aa)
       
      0.509
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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