STRINGSTRING
Bra000396 protein (Brassica rapa) - STRING interaction network
"Bra000396" - AT2G45690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000396AT2G45690 (E=4e-167) SSE1, SSE, PEX16, ATPEX16 | SSE1 (SHRUNKEN SEED 1) (364 aa)    
Predicted Functional Partners:
Bra039320
AT2G45740 (E=1e-125) PEX11D | PEX11D (237 aa)
     
   
  0.625
Bra032652
AT1G01860 (E=6e-151) PFC1 | PFC1 (PALEFACE 1); mRNA (2’-O-methyladenosine-N6-)-methyltransferase (588 aa)
     
   
  0.625
Bra032228
AT1G47750 (E=2e-064) PEX11A | PEX11A (PEROXIN 11A) (226 aa)
     
   
  0.625
Bra018149
AT3G47430 (E=4e-118) PEX11B | PEX11B (226 aa)
     
   
  0.625
Bra014455
AT3G61070 (E=2e-088) PEX11E | PEX11E (236 aa)
     
   
  0.625
Bra014092
AT1G47750 (E=1e-098) PEX11A | PEX11A (PEROXIN 11A) (247 aa)
     
   
  0.625
Bra004932
AT2G45740 (E=5e-122) PEX11D | PEX11D (237 aa)
     
   
  0.625
Bra003435
AT3G61070 (E=1e-112) PEX11E | PEX11E (235 aa)
     
   
  0.625
Bra000401
AT2G45740 (E=4e-120) PEX11D | PEX11D (238 aa)
     
   
  0.625
Bra021296
AT3G18160 (E=4e-153) PEX3-1 | peroxin-3 family protein (443 aa)
     
 
  0.619
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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