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Bra000400 protein (Brassica rapa) - STRING interaction network
"Bra000400" - AT2G45730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000400AT2G45730 (E=3e-108) | eukaryotic initiation factor 3 gamma subunit family protein (438 aa)    
Predicted Functional Partners:
Bra008750
AT5G14600 (E=4e-159) | tRNA (adenine-N1-)-methyltransferase (320 aa)
     
  0.988
Bra039889
AT5G15550 (E=1e-024) | transducin family protein / WD-40 repeat family protein (120 aa)
     
        0.969
Bra023524
AT5G15550 (E=4e-208) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.969
Bra008691
AT5G15550 (E=7e-209) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.969
Bra006306
AT5G15550 (E=2e-204) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.969
Bra034530
AT4G32720 (E=5e-177) AtLa1 | AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (439 aa)
     
 
  0.866
Bra011375
AT4G32720 (E=5e-178) AtLa1 | AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (446 aa)
     
 
  0.866
Bra023582
AT5G16750 (E=0.0) TOZ | TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (868 aa)
     
        0.857
Bra008598
AT5G16750 (E=0.0) TOZ | TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (868 aa)
     
        0.857
Bra032831
AT1G27470 (E=0.0) | transducin-related / WD-40 repeat protein-related (800 aa)
     
        0.856
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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