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Bra000409 protein (Brassica rapa) - STRING interaction network
"Bra000409" - AT2G46020 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000409AT2G46020 (E=0.0) CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative (2162 aa)    
Predicted Functional Partners:
Bra039916
AT2G18090 (E=6e-020) | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (144 aa)
     
  0.985
Bra022223
AT3G17590 (E=1e-117) BSH, CHE1 | BSH (BUSHY GROWTH); chromatin binding / protein binding (236 aa)
     
  0.977
Bra016409
AT1G21700 (E=0.0) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (793 aa)
     
  0.975
Bra000456
AT2G47630 (E=2e-170) | esterase/lipase/thioesterase family protein (840 aa)
   
  0.970
Bra021864
AT2G33610 (E=5e-189) ATSWI3B, CHB2 | ATSWI3B (SWITCH SUBUNIT 3); DNA binding (459 aa)
     
  0.970
Bra017943
AT1G21700 (E=1e-185) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (617 aa)
     
  0.970
Bra011533
AT4G34430 (E=0.0) CHB3, ATSWI3D | CHB3; DNA binding / transcription factor/ zinc ion binding (932 aa)
     
  0.970
Bra004441
AT2G47620 (E=8e-155) ATSWI3A, CHB1 | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A); DNA binding (514 aa)
     
  0.970
Bra006242
AT5G14170 (E=8e-202) CHC1 | CHC1 (503 aa)
     
  0.963
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
     
  0.960
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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