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Bra000410 protein (Brassica rapa) - STRING interaction network
"Bra000410" - AT2G46030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000410AT2G46030 (E=4e-084) UBC6 | UBC6 (ubiquitin-conjugating enzyme 6); ubiquitin-protein ligase (187 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
  0.831
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
  0.831
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
  0.831
Bra022260
AT5G19180 (E=2e-057) ECR1 | ECR1 (E1 C-terminal related 1); NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme (305 aa)
     
  0.732
Bra022257
AT3G07880 (E=3e-056) | Rho GDP-dissociation inhibitor family protein (291 aa)
     
  0.732
Bra006497
AT5G19180 (E=8e-217) ECR1 | ECR1 (E1 C-terminal related 1); NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme (445 aa)
     
  0.732
Bra002219
AT5G19180 (E=9e-210) ECR1 | ECR1 (E1 C-terminal related 1); NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme (455 aa)
     
  0.732
Bra022779
AT2G30110 (E=0.0) ATUBA1, MOS5 | ATUBA1; ubiquitin activating enzyme/ ubiquitin-protein ligase (1018 aa)
     
  0.726
Bra021611
AT2G30110 (E=0.0) ATUBA1, MOS5 | ATUBA1; ubiquitin activating enzyme/ ubiquitin-protein ligase (1047 aa)
     
  0.726
Bra018338
AT2G30110 (E=0.0) ATUBA1, MOS5 | ATUBA1; ubiquitin activating enzyme/ ubiquitin-protein ligase (1102 aa)
     
  0.726
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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