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Bra000419 protein (Brassica rapa) - STRING interaction network
"Bra000419" - AT2G46330 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000419AT2G46330 (E=1e-031) AGP16, ATAGP16 | AGP16 (ARABINOGALACTAN PROTEIN 16) (73 aa)    
Predicted Functional Partners:
Bra038390
Uncharacterized protein (81 aa)
           
  0.532
Bra025551
AT5G40730 (E=4e-017) AGP24, ATAGP24 | AGP24 (67 aa)
           
  0.476
Bra021448
AT2G47930 (E=1e-028) AGP26, ATAGP26 | AGP26 (ARABINOGALACTAN PROTEIN 26) (140 aa)
           
  0.453
Bra031924
AT5G64310 (E=8e-016) AGP1, ATAGP1 | AGP1 (ARABINOGALACTAN PROTEIN 1) (130 aa)
     
   
  0.427
Bra024284
AT5G64310 (E=2e-014) AGP1, ATAGP1 | AGP1 (ARABINOGALACTAN PROTEIN 1) (124 aa)
     
   
  0.427
Bra039397
AT3G13520 (E=7e-013) AGP12, ATAGP12 | AGP12 (ARABINOGALACTAN PROTEIN 12) (62 aa)
           
  0.408
Bra027425
AT3G13520 (E=1e-015) AGP12, ATAGP12 | AGP12 (ARABINOGALACTAN PROTEIN 12) (61 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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