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Bra000420 protein (Brassica rapa) - STRING interaction network
"Bra000420" - AT2G46340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000420AT2G46340 (E=0.0) SPA1 | SPA1 (SUPPRESSOR OF PHYA-105 1); protein binding / signal transducer (953 aa)    
Predicted Functional Partners:
Bra017018
AT2G40290 (E=8e-158) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (429 aa)
       
  0.761
Bra009215
AT5G05470 (E=1e-007) EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | EIF2 ALPHA; RNA binding / translation initiation factor (377 aa)
       
  0.761
Bra009212
AT5G05470 (E=1e-007) EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | EIF2 ALPHA; RNA binding / translation initiation factor (453 aa)
       
  0.761
Bra004970
AT2G40290 (E=3e-155) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (342 aa)
       
  0.761
Bra000182
AT2G40290 (E=1e-162) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (342 aa)
       
  0.761
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
     
0.664
Bra007447
AT3G59410 (E=0.0) | protein kinase family protein (1243 aa)
     
 
0.624
Bra037393
AT4G01000 (E=1e-117) | ubiquitin family protein (419 aa)
         
  0.587
Bra029578
AT5G20920 (E=4e-098) EIF2 BETA | EIF2 BETA; translation initiation factor (264 aa)
         
  0.577
Bra020136
AT5G20920 (E=1e-106) EIF2 BETA | EIF2 BETA; translation initiation factor (272 aa)
         
  0.577
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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