STRINGSTRING
Bra000421 protein (Brassica rapa) - STRING interaction network
"Bra000421" - AT2G46370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000421AT2G46370 (E=1e-304) JAR1, FIN219 | JAR1 (JASMONATE RESISTANT 1); ATP binding / adenylyltransferase/ catalytic/ jasmonate-amino synthetase (609 aa)    
Predicted Functional Partners:
Bra003645
AT1G78370 (E=2e-106) ATGSTU20 | ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20); glutathione transferase (204 aa)
       
 
  0.935
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
     
 
  0.703
Bra010897
AT1G28200 (E=2e-120) FIP1 | FIP1 (FH INTERACTING PROTEIN 1) (255 aa)
       
      0.625
Bra005000
AT2G39940 (E=2e-311) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase (603 aa)
           
  0.604
Bra000156
AT2G39940 (E=4e-307) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase (590 aa)
           
  0.604
Bra027690
AT1G64280 (E=2e-195) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (570 aa)
       
 
  0.579
Bra010178
AT1G32640 (E=5e-263) ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | MYC2; DNA binding / transcription activator/ transcription factor (600 aa)
           
  0.543
Bra013161
AT2G06050 (E=2e-204) OPR3 | OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase (389 aa)
           
  0.540
Bra009539
AT5G03280 (E=0.0) EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN2 | EIN2 (ETHYLENE INSENSITIVE 2); transporter (1311 aa)
           
  0.538
Bra035320
AT5G42650 (E=2e-226) AOS, CYP74A, DDE2 | AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding (529 aa)
           
  0.505
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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