STRINGSTRING
Bra000424 protein (Brassica rapa) - STRING interaction network
"Bra000424" - AT2G46470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000424AT2G46470 (E=2e-163) OXA1L | OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) (429 aa)    
Predicted Functional Partners:
Bra035669
AT2G28800 (E=3e-180) ALB3, ABL3 | ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (447 aa)
   
   
0.885
Bra038815
AT2G18710 (E=8e-243) SCY1 | SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter (551 aa)
     
 
  0.792
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
   
   
  0.780
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
   
   
  0.780
Bra017876
AT4G39880 (E=4e-072) | ribosomal protein L23 family protein (176 aa)
     
 
  0.765
Bra011825
AT4G39880 (E=3e-073) | ribosomal protein L23 family protein (179 aa)
     
 
  0.765
Bra012507
AT1G24490 (E=5e-198) ALB4, ARTEMIS | ALB4 (ALBINA 4) (498 aa)
   
   
0.740
Bra032303
AT1G29310 (E=1e-267) | P-P-bond-hydrolysis-driven protein transmembrane transporter (475 aa)
     
 
  0.712
Bra005441
AT2G34250 (E=1e-270) | protein transport protein sec61, putative (475 aa)
     
 
  0.712
Bra022846
AT2G31530 (E=2e-138) EMB2289, SCY2 | EMB2289 (EMBRYO DEFECTIVE 2289); P-P-bond-hydrolysis-driven protein transmembrane transporter (557 aa)
     
 
  0.712
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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