STRINGSTRING
Bra000430 protein (Brassica rapa) - STRING interaction network
"Bra000430" - AT2G46600 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000430AT2G46600 (E=2e-058) | calcium-binding protein, putative (118 aa)    
Predicted Functional Partners:
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
     
  0.988
Bra023578
AT5G16630 (E=6e-259) ATRAD4, RAD4 | RAD4; damaged DNA binding (1323 aa)
       
  0.973
Bra037195
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1264 aa)
       
  0.965
Bra031801
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1281 aa)
       
  0.950
Bra020761
AT3G06290 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- SAC3/GANP family protein (TAIR-AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species- Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source- NCBI BLink). (1647 aa)
       
 
  0.943
Bra003181
AT3G54380 (E=1e-155) | SAC3/GANP family protein (385 aa)
       
 
  0.943
Bra001190
AT3G06290 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- SAC3/GANP family protein (TAIR-AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species- Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source- NCBI BLink). (1640 aa)
       
 
  0.943
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
       
  0.836
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
       
  0.836
Bra026355
AT4G27370 (E=0.0) VIIIB, ATVIIIB | VIIIB; motor (1244 aa)
       
  0.831
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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