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Bra000436 protein (Brassica rapa) - STRING interaction network
"Bra000436" - AT2G46970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000436AT2G46970 (E=2e-150) PIL1 | PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor (404 aa)    
Predicted Functional Partners:
Bra035933
AT5G61380 (E=2e-098) TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator (509 aa)
       
 
  0.704
Bra022192
AT4G16250 (E=0.0) PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer (1192 aa)
       
  0.653
Bra005404
AT2G34640 (E=1e-244) PTAC12 | PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) (525 aa)
       
      0.613
Bra040094
AT4G16780 (E=3e-124) ATHB-2, HAT4, ATHB2 | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (285 aa)
     
   
  0.553
Bra013286
AT4G18130 (E=0.0) PHYE | PHYE (PHYTOCHROME DEFECTIVE E); G-protein coupled photoreceptor/ protein histidine kinase/ signal transducer ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1114 aa)
       
  0.529
Bra020013
AT1G09570 (E=0.0) PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (1210 aa)
       
  0.488
Bra040335
AT2G44910 (E=9e-065) ATHB4, ATHB-4 | ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor (321 aa)
           
  0.479
Bra016854
AT2G42870 (E=9e-030) PAR1, HLH1 | PAR1 (PHY RAPIDLY REGULATED 1) (116 aa)
           
  0.418
Bra004712
AT2G42870 (E=2e-038) PAR1, HLH1 | PAR1 (PHY RAPIDLY REGULATED 1) (116 aa)
           
  0.418
Bra000276
AT2G42870 (E=2e-035) PAR1, HLH1 | PAR1 (PHY RAPIDLY REGULATED 1) (116 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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